_PROBLEM CoEPrA-2006_Classification_004

_GROUP_NAME Venkat Mathura

_GROUP_MEMBERS 
Venkat Mathura

_ADDRESS 
Roskamp Institute, 
2040 Whitfield Avenue 
Sarasota, FL 34243
USA

_MODELING_PROCEDURE
Individual five dimensional amino acid descriptors were
taken from the publication: 

Venkatarajan, M.S. and Braun, W.
New quantitative descriptors of amino acids based on
multidimensional scaling of a large number of physical-chemical properties. 
J. Mol. Model.  7(12):445-453, 2001. 

Each nonapeptide is broken into 45 substrings with max size
of 9 and minimum size of 1. For each substring average of
five vectors is calculated. There are 225 input descriptor
for each peptide. SVM was used to build the model with
calibrant data set. Radial function was used (weight 1). The
sensitivity on the calibrant dataset was 100% and specificity was
95%. The SVM application was run at the website: http://svm.nbcr.net/.
No cross validation was performed. The output model was used for
predicting the test data.

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