_PROBLEM CoEPrA-2006_Classification_004

_GROUP_NAME Levon Budagyan

_GROUP_MEMBERS
Levon Budagyan

_ADDRESS
levon@molsoft.com;

Levon Budagyan
3366 N. Torrey Pines Ct.,
La Jolla, CA, 92037,
USA;

Molsoft (www.molsoft.com)

_MODELING_PROCEDURE
I used SVM classifier with boolean vector descriptors. Boolean vector 
descriptors were obtained from the nona-peptides the following way. 
Each 
amino acid in a nona-peptide in the peptide was encoded with a simple 
bit pattern: 'A'->10000.., 'B'->01000.., 'Z'->..0001. Then boolean 
vectors for each position were concatenated.
SVM classifier had dot kernel.

All data transformations and analysis were performed using the
ICM Pro 3.4 program (http://www.molsoft.com/icm_pro.html).

_PREDICTION
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